Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-arg | Not Available | Not Available | Positive | 3023876 - 3023952 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 3024151 - 3024227 | Not Available |
| Trna-ser | Not Available | Not Available | Positive | 3024231 - 3024323 | Not Available |
| carbon storage regulator | SK85_02931 | A8ANQ0 | Negative | 3024639 - 3024824 | 6856.34 |
| alanine-trna ligase | SK85_02932 | B1XCM5 | Negative | 3025059 - 3027689 | 96037.9 |
| regulatory protein recx | SK85_02933 | C4ZYU3 | Negative | 3027817 - 3028317 | 19425.1 |
| protein reca | SK85_02934 | A7ZQC8 | Negative | 3028386 - 3029447 | 37975.6 |
| nicotinamide-nucleotide amidohydrolase pncc | SK85_02935 | P0A6G4 | Negative | 3029527 - 3030024 | 17582.7 |
| membrane-bound lytic murein transglycosylase b | SK85_02936 | P41052 | Negative | 3030169 - 3031359 | 44258.0 |
| glucitol/sorbitol permease iic component | SK85_02937 | P56579 | Positive | 3031510 - 3032073 | 20581.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





