Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SK85_02888 | P76612 | Negative | 2989213 - 2990004 | 29896.6 |
| hypothetical protein | SK85_02889 | P76613 | Negative | 2990104 - 2990586 | 18025.5 |
| Trna-met | Not Available | Not Available | Positive | 2991338 - 2991413 | Not Available |
| hypothetical protein | SK85_02891 | P76616 | Positive | 2991973 - 2992305 | 12470.8 |
| hypothetical protein | SK85_02892 | Not Available | Positive | 2992324 - 2993010 | 25775.4 |
| hypothetical protein | SK85_02893 | Not Available | Positive | 2993023 - 2993814 | 30457.3 |
| protein csid | SK85_02894 | C4ZYR1 | Positive | 2994561 - 2995538 | 37362.5 |
| l-2-hydroxyglutarate oxidase lhgo | SK85_02895 | P37339 | Positive | 2995558 - 2996826 | 46070.6 |
| succinate-semialdehyde dehydrogenase | SK85_02896 | P25526 | Positive | 2996849 - 2998297 | 51723.0 |
| 4-aminobutyrate aminotransferase gabt | SK85_02897 | P22256 | Positive | 2998311 - 2999591 | 45777.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





