Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phospho-2-dehydro-3-deoxyheptonate aldolase, tyr-sensitive | SK85_02855 | P00888 | Negative | 2957056 - 2958126 | 38806.2 |
| lipoprotein | SK85_02856 | P11289 | Positive | 2958339 - 2958701 | 13073.1 |
| hypothetical protein | SK85_02857 | P64549 | Positive | 2958851 - 2959369 | 18979.2 |
| diguanylate cyclase | SK85_02858 | P46139 | Positive | 2959359 - 2960585 | 45992.1 |
| outer membrane lipoprotein | SK85_02859 | P07021 | Positive | 2960601 - 2961083 | 17245.5 |
| 50s ribosomal protein l19 | SK85_02860 | A7ZQ46 | Negative | 2961159 - 2961506 | 13134.0 |
| trna (guanine-n(1)-)-methyltransferase | SK85_02861 | A7ZQ47 | Negative | 2961548 - 2962315 | 28424.0 |
| ribosome maturation factor rimm | SK85_02862 | A7ZQ48 | Negative | 2962346 - 2962894 | 20606.6 |
| 30s ribosomal protein s16 | SK85_02863 | A7ZQ49 | Negative | 2962913 - 2963161 | 9191.08 |
| adhesin-like autotransporter | SK85_02887 | P52143 | Negative | 2983721 - 2988301 | 157470.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





