Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit | SK85_02792 | A7ZPY3 | Positive | 2886525 - 2886845 | 11329.3 |
| 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | SK85_02793 | C4ZXB6 | Positive | 2886842 - 2887654 | 28501.3 |
| 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin-nad(+) reductase component | SK85_02794 | C4ZXB7 | Positive | 2887664 - 2888866 | 43980.8 |
| inner membrane protein ypha | SK85_02795 | P0AD47 | Positive | 2888963 - 2889385 | 15212.3 |
| aldose 1-epimerase | SK85_02796 | P76584 | Negative | 2889433 - 2890305 | 32718.1 |
| oxidoreductase, zn-dependent and nad(p)-binding | SK85_02797 | P77360 | Negative | 2890317 - 2891378 | 38053.0 |
| sugar abc transporter membrane protein | SK85_02798 | P77315 | Negative | 2891444 - 2892442 | 34485.6 |
| hypothetical protein | SK85_02799 | P77509 | Negative | 2892467 - 2892916 | 16618.1 |
| transposase for insertion sequence element is421 | SK85_02800 | Not Available | Positive | 2892986 - 2894098 | 40911.1 |
| hypothetical protein | SK85_02801 | Not Available | Positive | 2894121 - 2894261 | 5345.71 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





