Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cysteine desulfurase | SK85_02782 | A7ZPX4 | Negative | 2876116 - 2877330 | 45092.2 |
| hth-type transcriptional regulator iscr | SK85_02783 | A7ZPX5 | Negative | 2877442 - 2877930 | 17337.6 |
| trna (cytidine/uridine-2'-o-)-methyltransferase trmj | SK85_02784 | A1AE69 | Negative | 2878200 - 2878940 | 27049.6 |
| inositol-1-monophosphatase | SK85_02785 | P0ADG6 | Positive | 2879059 - 2879862 | 29173.8 |
| peptidase | SK85_02786 | P77538 | Positive | 2880007 - 2880861 | 31517.6 |
| stationary phase inducible protein | SK85_02787 | P54901 | Positive | 2881052 - 2882332 | 49039.4 |
| 3-phenylpropionic transporter | SK85_02788 | Q47142 | Negative | 2882324 - 2883463 | 41595.1 |
| hca operon transcriptional activator | SK85_02789 | Q47141 | Negative | 2883623 - 2884513 | 32840.2 |
| 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha | SK85_02790 | P0ABR6 | Positive | 2884649 - 2886010 | 51111.8 |
| 3-phenylpropionate/cinnamic acid dioxygenase subunit beta | SK85_02791 | A7ZPY2 | Positive | 2886007 - 2886525 | 20580.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





