Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna(met) cytidine acetyltransferase tmca | SK85_02722 | P76562 | Negative | 2808382 - 2810397 | 74896.7 |
| hypothetical protein | SK85_02723 | P64431 | Negative | 2810412 - 2811275 | 31462.0 |
| phosphoribosylaminoimidazole-succinocarboxamide synthase | SK85_02724 | A7ZPS1 | Negative | 2811443 - 2812156 | 26996.5 |
| hypothetical protein | SK85_02725 | Not Available | Positive | 2812228 - 2812458 | 8788.62 |
| outer membrane protein assembly factor bamc | SK85_02726 | P0A903 | Negative | 2812369 - 2813403 | 36844.5 |
| 4-hydroxy-tetrahydrodipicolinate synthase | SK85_02727 | B7M7I1 | Negative | 2813420 - 2814298 | 31271.8 |
| glycine cleavage system transcriptional repressor | SK85_02728 | P0A9I3 | Positive | 2814444 - 2815016 | 20769.8 |
| thiol peroxidase, thioredoxin-dependent | SK85_02729 | P0AE54 | Positive | 2815016 - 2815486 | 17634.9 |
| hydrogenase-4 component a | SK85_02730 | P23481 | Positive | 2815739 - 2816356 | 22155.5 |
| hydrogenase-4 component b | SK85_02731 | P23482 | Positive | 2816356 - 2818374 | 72591.4 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





