Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transketolase 2 | SK85_02712 | P33570 | Positive | 2794174 - 2796177 | 73046.8 |
| hypothetical protein | SK85_02713 | P76559 | Negative | 2796272 - 2797315 | 38738.4 |
| gdp-mannose pyrophosphatase nudk | SK85_02714 | B1XAD8 | Negative | 2797441 - 2798016 | 21749.9 |
| protein aega | SK85_02715 | P37127 | Negative | 2798084 - 2800063 | 71848.0 |
| nitrate/nitrite sensor protein narq | SK85_02716 | P27896 | Positive | 2800269 - 2801969 | 63700.7 |
| aminoglycoside/multidrug efflux system protein | SK85_02717 | P24177 | Positive | 2802133 - 2805246 | 113036.0 |
| protein yffb | SK85_02718 | P24178 | Positive | 2805785 - 2806141 | 13601.3 |
| succinyl-diaminopimelate desuccinylase | SK85_02719 | A7ZPR5 | Positive | 2806145 - 2807272 | 41271.4 |
| hypothetical protein | SK85_02720 | A7ZPR6 | Positive | 2807300 - 2807500 | 8071.78 |
| esterase ypfh | SK85_02721 | P76561 | Negative | 2807610 - 2808308 | 24856.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





