Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxidoreductase ucpa | SK85_02682 | P37440 | Negative | 2765160 - 2765951 | 27851.6 |
| hth-type transcriptional regulator murr | SK85_02683 | C4ZVV8 | Negative | 2766080 - 2766937 | 31193.6 |
| n-acetylmuramic acid 6-phosphate etherase | SK85_02684 | C4ZVV9 | Positive | 2767101 - 2767997 | 31235.9 |
| pts system n-acetylmuramic acid-specific eiibc component | SK85_02685 | P77272 | Positive | 2768001 - 2769425 | 49805.0 |
| hypothetical protein | SK85_02686 | P77619 | Positive | 2769430 - 2770734 | 47755.1 |
| iron-dependent peroxidase | SK85_02687 | P76536 | Negative | 2770974 - 2771873 | 33086.2 |
| hypothetical protein | SK85_02688 | P76537 | Negative | 2771969 - 2772544 | 20898.7 |
| inner membrane protein yfez | SK85_02689 | P76538 | Negative | 2772605 - 2773054 | 17120.3 |
| acetyltransferase ypea | SK85_02690 | P76539 | Negative | 2773041 - 2773466 | 16312.5 |
| n-acetylmuramoyl-l-alanine amidase amia | SK85_02691 | P36548 | Positive | 2773680 - 2774549 | 31413.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





