Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Head-tail joining protein | SK85_01763 | P68660 | Negative | 1799483 - 1799689 | 7555.15 |
| Dna packaging protein | SK85_01764 | P03708 | Negative | 1799686 - 1801611 | 73288.6 |
| Dna packaging protein | SK85_01765 | Not Available | Negative | 1801586 - 1802131 | 20457.3 |
| Putative envelope protein | SK85_01766 | P76156 | Positive | 1802811 - 1803221 | 16497.8 |
| Csp | SK85_01767 | P0A987 | Negative | 1804221 - 1804433 | 7684.14 |
| Phage-tail assembly-like protein | SK85_01768 | P76158 | Negative | 1804796 - 1805293 | 18310.8 |
| Endolysin | SK85_01769 | P76159 | Negative | 1805290 - 1805823 | 19663.6 |
| Hypothetical protein | SK85_01770 | P76160 | Negative | 1805820 - 1806131 | 12091.3 |
| Holin protein | SK85_01771 | P77237 | Negative | 1806136 - 1806342 | 7394.97 |
| Attr | Not Available | Not Available | Positive | 1806382 - 1806394 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





