Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anaerobic glycerol-3-phosphate dehydrogenase subunit c | SK85_02492 | P0A997 | Positive | 2564993 - 2566183 | 44110.4 |
| hypothetical protein | SK85_02493 | P37014 | Positive | 2566376 - 2567275 | 34879.8 |
| hypothetical protein | SK85_02494 | V9HVX0 | Positive | 2567288 - 2567473 | 6881.16 |
| 2-keto-3-deoxy-l-rhamnonate aldolase | SK85_02495 | C4ZU87 | Negative | 2567514 - 2568317 | 28917.7 |
| inner membrane transporter rhmt | SK85_02496 | P76470 | Negative | 2568335 - 2569624 | 46197.3 |
| l-rhamnonate dehydratase | SK85_02497 | P77215 | Negative | 2569681 - 2570886 | 44245.0 |
| transcriptional regulator | SK85_02498 | Not Available | Negative | 2570901 - 2571491 | 21815.1 |
| transposase | SK85_02499 | Not Available | Positive | 2571587 - 2571913 | 12644.0 |
| transposase | SK85_02500 | Not Available | Positive | 2571913 - 2572800 | 33679.1 |
| hypothetical protein | SK85_02501 | P77732 | Negative | 2572682 - 2572996 | 11693.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





