Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-ketoglutarate-dependent dioxygenase alkb | SK85_02462 | P05050 | Negative | 2518164 - 2518814 | 24076.8 |
| bifunctional transcriptional activator/dna repair enzyme ada | SK85_02463 | P06134 | Negative | 2518814 - 2519878 | 39326.0 |
| thiamine biosynthesis lipoprotein apbe | SK85_02464 | P0AB86 | Negative | 2519952 - 2521007 | 38551.0 |
| outer membrane protein c | SK85_02465 | P06996 | Negative | 2521119 - 2522222 | 40370.3 |
| phosphotransferase rcsd | SK85_02466 | P39838 | Positive | 2522960 - 2525632 | 100405.0 |
| transcriptional regulatory protein rcsb | SK85_02467 | P69409 | Positive | 2525649 - 2526299 | 23672.0 |
| sensor histidine kinase rcsc | SK85_02468 | P0DMC5 | Negative | 2526499 - 2529348 | 106513.0 |
| signal transduction histidine-protein kinase atos | SK85_02469 | Q06067 | Positive | 2529515 - 2531341 | 67794.1 |
| acetoacetate metabolism regulatory protein atoc | SK85_02470 | Q06065 | Positive | 2531338 - 2532723 | 52160.5 |
| acetate coa-transferase subunit alpha | SK85_02471 | P76458 | Positive | 2532919 - 2533581 | 23527.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





