Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deoxycytidine triphosphate deaminase | SK85_02312 | A7ZNN9 | Negative | 2350698 - 2351279 | 21222.4 |
| uridine kinase | SK85_02313 | P0A8F6 | Negative | 2351371 - 2352012 | 24354.6 |
| diguanylate cyclase | SK85_02314 | Not Available | Positive | 2352330 - 2354450 | 80216.7 |
| hypothetical protein | SK85_02315 | P38097 | Positive | 2354477 - 2355646 | 42546.5 |
| dna-3-methyladenine glycosylase 2 | SK85_02316 | P04395 | Negative | 2355685 - 2356542 | 31691.5 |
| chaperone | SK85_02317 | P36928 | Positive | 2356676 - 2358028 | 49333.2 |
| hypothetical protein | SK85_02318 | Not Available | Negative | 2358041 - 2359687 | 60933.8 |
| transposase inse for insertion sequence is3e | SK85_02319 | Not Available | Positive | 2359767 - 2360066 | 11543.8 |
| transposase insf for insertion sequence is3 | SK85_02320 | Not Available | Positive | 2360063 - 2360929 | 33542.2 |
| hypothetical protein | SK85_02321 | P76393 | Negative | 2360943 - 2361248 | 10767.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





