Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SK85_02092 | P67176 | Negative | 2119334 - 2120074 | 26438.1 |
| dihydroneopterin triphosphate pyrophosphatase | SK85_02093 | P0AFC1 | Negative | 2120103 - 2120612 | 19345.0 |
| aspartate-trna ligase | SK85_02094 | A7ZMZ0 | Negative | 2120673 - 2122445 | 65834.1 |
| isochorismatase yecd | SK85_02095 | P0ADI8 | Positive | 2122755 - 2123321 | 20476.4 |
| hypothetical protein | SK85_02096 | P37348 | Positive | 2123318 - 2124136 | 31480.8 |
| inner membrane protein yecn | SK85_02097 | P64516 | Positive | 2124189 - 2124584 | 15227.2 |
| trna (cmo5u34)-methyltransferase | SK85_02098 | A7ZMZ5 | Positive | 2124625 - 2125368 | 27792.3 |
| trna (mo5u34)-methyltransferase | SK85_02099 | B7USP8 | Positive | 2125365 - 2126336 | 37008.6 |
| trimethylamine-n-oxide reductase 2 | SK85_02100 | P46923 | Negative | 2126501 - 2128930 | 88928.8 |
| cytochrome c-type protein tory | SK85_02101 | P58361 | Negative | 2128955 - 2130055 | 40191.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





