Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SK85_02062 | P64504 | Positive | 2093706 - 2093942 | 8753.26 |
| hypothetical protein | SK85_02063 | P76275 | Positive | 2093963 - 2094238 | 10434.4 |
| serine/threonine-protein phosphatase 1 | SK85_02064 | P55798 | Negative | 2094239 - 2094895 | 25275.3 |
| hypothetical protein | SK85_02065 | P64506 | Negative | 2095291 - 2095632 | 12379.1 |
| inner membrane protein yebz | SK85_02066 | P76278 | Negative | 2095645 - 2096517 | 32528.3 |
| protein yoba | SK85_02067 | P0AA58 | Negative | 2096521 - 2096895 | 13410.9 |
| dna polymerase iii subunit theta | SK85_02068 | P0ABT0 | Positive | 2097034 - 2097264 | 8846.79 |
| hypothetical protein | SK85_02069 | P76280 | Positive | 2097366 - 2098022 | 24396.4 |
| exodeoxyribonuclease 10 | SK85_02070 | P0AEK1 | Positive | 2098046 - 2098708 | 25134.5 |
| protease 2 | SK85_02071 | P24555 | Negative | 2098705 - 2100765 | 79482.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





