Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinylornithine transaminase | SK85_01972 | A7ZML6 | Negative | 2001345 - 2002565 | 43667.8 |
| exodeoxyribonuclease iii | SK85_01973 | P09030 | Positive | 2003011 - 2003817 | 30970.9 |
| tvp38/tmem64 family membrane protein ydjx | SK85_01974 | P76219 | Positive | 2003984 - 2004694 | 26059.7 |
| hypothetical protein | SK85_01975 | P76220 | Positive | 2004699 - 2005376 | 24126.6 |
| tvp38/tmem64 family inner membrane protein ydjz | SK85_01976 | P76221 | Positive | 2005391 - 2006098 | 26161.8 |
| carboxymuconolactone decarboxylase | SK85_01977 | P76222 | Positive | 2006098 - 2006646 | 20534.1 |
| protein ynjb | SK85_01978 | P76223 | Positive | 2006656 - 2007822 | 42818.7 |
| inner membrane abc transporter permease ynjc | SK85_01979 | P76224 | Positive | 2007795 - 2009330 | 56246.2 |
| abc transporter atp-binding protein | SK85_01980 | P76909 | Positive | 2009330 - 2009983 | 24018.0 |
| thiosulfate sulfurtransferase ynje | SK85_01981 | P78067 | Positive | 2010050 - 2011357 | 48215.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





