Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | SK85_01812 | P77559 | Negative | 1839307 - 1840200 | 33283.4 |
| inner membrane transporter ynfm | SK85_01813 | P43531 | Positive | 1840307 - 1841560 | 45260.2 |
| hypothetical protein | SK85_01814 | C4ZY59 | Positive | 1841984 - 1842292 | 10591.8 |
| protease ydgd | SK85_01815 | P76176 | Positive | 1842568 - 1843389 | 29278.6 |
| spermidine export protein mdti | SK85_01816 | A7ZM58 | Negative | 1843428 - 1843757 | 11720.8 |
| spermidine export protein mdtj | SK85_01817 | A7ZM59 | Negative | 1843744 - 1844109 | 13145.7 |
| ai-2 transporter tqsa | SK85_01818 | P0AFS5 | Positive | 1844521 - 1845555 | 37545.3 |
| nad(p) transhydrogenase subunit beta | SK85_01819 | P0AB69 | Negative | 1845580 - 1846968 | 48726.0 |
| nad(p) transhydrogenase subunit alpha | SK85_01820 | P07001 | Negative | 1846979 - 1848511 | 54626.6 |
| protein ydgh | SK85_01821 | P76177 | Positive | 1849035 - 1849979 | 33874.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





