Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate dehydrogenase, nitrate-inducible, major subunit | SK85_01670 | P24183 | Positive | 1702269 - 1702856 | 21465.8 |
| formate dehydrogenase, nitrate-inducible, major subunit | SK85_01671 | Not Available | Positive | 1702905 - 1705316 | 89840.8 |
| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit | SK85_01672 | P0AAJ3 | Positive | 1705329 - 1706213 | 32240.4 |
| formate dehydrogenase, nitrate-inducible, cytochrome b556(fdn) subunit | SK85_01673 | P0AEK8 | Positive | 1706206 - 1706859 | 25370.0 |
| higa family addiction module antidote protein | SK85_01674 | P67700 | Negative | 1707088 - 1707372 | 10401.7 |
| alcohol dehydrogenase, propanol-preferring | SK85_01675 | P39451 | Negative | 1707518 - 1708528 | 35381.6 |
| nad-dependent malic enzyme | SK85_01676 | C4ZWP8 | Negative | 1708662 - 1710359 | 63201.0 |
| stationary-phase-induced ribosome-associated protein | SK85_01677 | P68193 | Negative | 1710516 - 1710653 | 5096.13 |
| protein bdm | SK85_01678 | P76127 | Negative | 1710755 - 1710970 | 7987.26 |
| peroxiredoxin osmc | SK85_01679 | P0C0L2 | Positive | 1711315 - 1711746 | 15089.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





