Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SK85_01460 | P77460 | Negative | 1478825 - 1479481 | 24046.8 |
| hypothetical protein | SK85_01461 | Not Available | Positive | 1479934 - 1480104 | 6258.45 |
| hypothetical protein | SK85_01462 | Not Available | Negative | 1480231 - 1480788 | 21106.2 |
| protein ycie | SK85_01463 | P21363 | Negative | 1481431 - 1481937 | 18962.5 |
| protein ycif | SK85_01464 | P21362 | Negative | 1481983 - 1482483 | 18598.2 |
| hypothetical protein | SK85_01465 | P21361 | Negative | 1482569 - 1482748 | 6002.69 |
| tryptophan synthase alpha chain | SK85_01466 | C4ZTV3 | Negative | 1483124 - 1483930 | 28725.8 |
| tryptophan synthase beta chain | SK85_01467 | A7ZL79 | Negative | 1483930 - 1485123 | 42985.6 |
| tryptophan biosynthesis protein trpcf | SK85_01468 | P00909 | Negative | 1485135 - 1486493 | 49363.9 |
| trpgd | SK85_01469 | P00904 | Negative | 1486497 - 1488092 | 56873.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





