Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SK85_01269 | Not Available | Positive | 1307823 - 1308104 | 11033.3 |
| sensor protein phoq | SK85_01270 | P23837 | Negative | 1308880 - 1310340 | 55302.8 |
| transcriptional regulatory protein phop | SK85_01271 | P23836 | Negative | 1310340 - 1311011 | 25536.7 |
| adenylosuccinate lyase | SK85_01272 | P0AB90 | Negative | 1311180 - 1312550 | 51545.7 |
| high frequency lysogenization protein hfld | SK85_01273 | A7ZKS2 | Negative | 1312554 - 1313195 | 22949.0 |
| trna-specific 2-thiouridylase mnma | SK85_01274 | A7ZKS3 | Negative | 1313231 - 1314337 | 40961.7 |
| phosphatase nudj | SK85_01275 | A7ZKS4 | Negative | 1314391 - 1314852 | 17433.8 |
| ribosomal large subunit pseudouridine synthase e | SK85_01276 | P75966 | Negative | 1314862 - 1315515 | 24881.8 |
| isocitrate dehydrogenase | SK85_01277 | P08200 | Positive | 1315687 - 1316937 | 45787.4 |
| transposase insd for insertion element is2a/d/f/h/i/k | SK85_01278 | Not Available | Negative | 1317726 - 1318631 | 34486.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





