Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein ycfz | SK85_01187 | P75961 | Negative | 1244511 - 1245299 | 28866.5 |
| inner membrane protein ymfa | SK85_01188 | P75962 | Negative | 1245296 - 1245757 | 17368.8 |
| spermidine/putrescine-binding periplasmic protein | SK85_01189 | P0AFK9 | Negative | 1245815 - 1246861 | 38869.1 |
| spermidine/putrescine transport system permease potc | SK85_01190 | P0AFK8 | Negative | 1246858 - 1247652 | 29112.7 |
| hypothetical protein | SK85_01246 | Not Available | Negative | 1288307 - 1288963 | 24032.7 |
| tail fiber assembly protein | SK85_01247 | P77087 | Positive | 1289032 - 1289298 | 10203.8 |
| spermidine/putrescine transport system permease potb | SK85_01248 | P0A2J8 | Negative | 1289530 - 1290393 | 32398.4 |
| spermidine/putrescine import atp-binding protein pota | SK85_01249 | P69876 | Negative | 1290377 - 1291513 | 43030.8 |
| peptidase t | SK85_01250 | C4ZS67 | Positive | 1291763 - 1292989 | 44926.1 |
| 50s ribosomal protein l16 arginine hydroxylase | SK85_01251 | P27431 | Negative | 1293038 - 1294159 | 42680.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





