Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SK85_00947 | Not Available | Positive | 984021 - 984434 | 15255.2 |
| hypothetical protein | SK85_00948 | P31062 | Positive | 984642 - 985184 | 20139.2 |
| hypothetical protein | SK85_00949 | Not Available | Positive | 985196 - 985477 | 11252.6 |
| atp-dependent clp protease adapter protein clps | SK85_00950 | A7ZJU9 | Positive | 986797 - 987117 | 12179.7 |
| atp-dependent clp protease atp-binding subunit clpa | SK85_00951 | P0ABI1 | Positive | 987148 - 989424 | 84211.9 |
| Trna-ser | Not Available | Not Available | Positive | 989768 - 989855 | Not Available |
| translation initiation factor if-1 | SK85_00953 | A8AIJ9 | Negative | 990109 - 990327 | 8250.1 |
| leucyl/phenylalanyl-trna-protein transferase | SK85_00954 | A7ZJV2 | Negative | 990612 - 991316 | 26620.0 |
| atp-binding/permease cydc | SK85_00955 | P23886 | Negative | 991358 - 993079 | 62909.1 |
| atp-binding/permease cydd | SK85_00956 | P29018 | Negative | 993080 - 994846 | 65060.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





