Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Lygf | SK85_01206 | Not Available | Positive | 1257438 - 1257833 | 15237.5 |
| Valyl-trna synthetase | SK85_01207 | Not Available | Positive | 1257890 - 1258474 | 21855.7 |
| hypothetical protein | SK85_01208 | Not Available | Positive | 1258590 - 1258694 | 3586.53 |
| Hypothetical protein | SK85_01209 | Not Available | Negative | 1258683 - 1258838 | 5656.93 |
| Host cell-killing modulation protein | SK85_01210 | P33236 | Positive | 1258883 - 1259095 | 7841.87 |
| Hypothetical protein | SK85_01211 | Not Available | Positive | 1259543 - 1260592 | 39160.9 |
| Crossover junction endodeoxyribonuclease rusa | SK85_01212 | Not Available | Positive | 1260605 - 1260979 | 14226.6 |
| Late gene regulator q | SK85_01213 | P76161 | Positive | 1260976 - 1261797 | 30678.9 |
| Putative terb | SK85_01214 | Not Available | Positive | 1262251 - 1262397 | 5339.24 |
| Hypothetical protein | SK85_01215 | Not Available | Positive | 1262394 - 1262561 | 6020.88 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





