Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein ybjj | SK85_00849 | P75810 | Negative | 901629 - 902756 | 38655.0 |
| transcriptional regulator | SK85_00850 | P75811 | Positive | 902921 - 903457 | 20308.6 |
| hypothetical protein | SK85_00899 | B7UMT9 | Negative | 940488 - 942173 | 60355.1 |
| inner membrane protein ybjm | SK85_00900 | P64440 | Positive | 942443 - 942820 | 14204.0 |
| glutaredoxin-1 | SK85_00901 | P68688 | Negative | 942850 - 943107 | 9669.4 |
| inner membrane protein | SK85_00902 | P46119 | Positive | 943267 - 943554 | 10521.4 |
| oxygen-insensitive nadph nitroreductase | SK85_00903 | P17117 | Positive | 943538 - 944260 | 26802.2 |
| ribosomal protein s6-l-glutamate ligase | SK85_00904 | B7UMU4 | Positive | 944321 - 945223 | 32438.5 |
| oxidoreductase | SK85_00905 | P0AAY8 | Positive | 945311 - 945787 | 17666.1 |
| putrescine-binding periplasmic protein | SK85_00906 | P31133 | Positive | 946138 - 947250 | 40841.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





