Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal protein s12 methylthiotransferase rimo | SK85_00839 | A7ZJQ2 | Negative | 892208 - 893533 | 49584.6 |
| biofilm regulator bssr | SK85_00840 | P0AAY2 | Positive | 893746 - 894129 | 14536.6 |
| soluble aldose sugar dehydrogenase ylii | SK85_00841 | P75804 | Positive | 894240 - 895355 | 41056.8 |
| glutathione s-transferase gstb | SK85_00842 | P0ACA8 | Negative | 895352 - 895978 | 23714.4 |
| d-alanyl-d-alanine carboxypeptidase dacc | SK85_00843 | P08506 | Positive | 896225 - 897427 | 43611.3 |
| deoxyribose operon repressor | SK85_00844 | P0ACK7 | Negative | 897474 - 898232 | 28549.5 |
| undecaprenyl pyrophosphate phosphatase | SK85_00845 | P75806 | Negative | 898290 - 898886 | 22399.9 |
| multidrug transporter mdfa | SK85_00846 | P0AEZ0 | Positive | 899171 - 900403 | 44323.7 |
| hypothetical protein | SK85_00847 | P0AAY4 | Negative | 900444 - 900722 | 9726.86 |
| flavin mononucleotide phosphatase ybji | SK85_00848 | P75809 | Negative | 900814 - 901629 | 30163.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





