Burkholderia cepacia strain LK29 189

Gram-negativeMicroaerophile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Burkholderia cepacia strain LK29 189 is a Gram-negative bacterium that primarily inhabits the rhizosphere, the zone of soil influenced by plant roots. This strain requires microaerophilic conditions for growth, indicating a preference for low levels of oxygen. It possesses a single replicon, suggesting a streamlined genomic structure that may contribute to its adaptability in various environments. This bacterium has a diverse range of hosts, including Homo sapiens (humans), Viridiplantae (plants), Anura (frogs), and Allium cepa (onion). The presence of B. cepacia in the human host raises health concerns, as it is associated with serious conditions such as pneumonia, infective endocarditis, and native valve endocarditis. These health effects highlight the potential pathogenicity of strain LK29 189 in immunocompromised individuals or those with chronic lung diseases, such as cystic fibrosis. The ecological role of B. cepacia in the rhizosphere can be complex; while it may contribute to plant health in certain contexts, its opportunistic pathogenicity underscores the need for careful management of its presence in agricultural settings. Understanding the balance between its beneficial and harmful effects is crucial for both plant health and human health considerations. The accession number for strain LK29 189 is LDWR00000000.1, which may facilitate further research into its genetic and phenotypic characteristics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia cepacia
Strainstrain LK29 189

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Burkholderia cepacia strain LK29 189
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens, Viridiplantae, Anura
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Burkholderia cepacia strain LK29 189, whole genome shotgun

Gene Summary

Adenine Count

1502503 bp

Thymine Count

1493223 bp

Guanine Count

2908883 bp

Cytosine Count

2938972 bp

Genome Length

8843581 bp

Protein-coding Genes

7469 genes

Non-Coding Genes

127 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peroxidaseVL15_29220P76536Positive6699831 - 670071231957.5
peroxiredoxinVL15_29225Not AvailableNegative6700794 - 670119514689.5
lysr family transcriptional regulatorVL15_29230P50327Negative6701293 - 670221633824.9
arac family transcriptional regulatorVL15_29235Not AvailablePositive6702679 - 670374339166.7
divalent metal cation transporter mnthVL15_29240Q8XSF6Positive6703692 - 670500846143.4
phosphoesteraseVL15_29245Not AvailablePositive6705090 - 670568020836.7
3-beta hydroxysteroid dehydrogenaseVL15_29250Q6WVP7Positive6706142 - 670693027650.1
nadp-dependent oxidoreductaseVL15_29255P76113Positive6706968 - 670798436000.5
membrane proteinVL15_29260P0AFS7Negative6708292 - 670934738394.1
lipoproteinVL15_29265Not AvailableNegative6709584 - 671016819559.4

Displaying genes 5741 – 5750 of 7596 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

453 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da

Displaying 1–10 of 453 metabolites

Health Effects

Health ConditionRelationReference
Infective endocarditisCausesPMC3112426
Native valve endocarditisCausesPMC3112426
PneumoniaCausesPMC9294674

Displaying health effects 1 – 3 of 3 in total