Stenotrophomonas acidaminiphila strain JCM 13310

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas acidaminiphila strain JCM 13310 is a rod-shaped bacterium notable for its possession of flagella, which contributes to its motility. This strain has been documented in the genomic database with the accession number LDJO00000000.1. Importantly, it has a single replicon, indicating a streamlined genomic structure, which may play a role in its adaptability and survival in various environments. Stenotrophomonas species, including S. acidaminiphila, are recognized for their metabolic versatility and ability to thrive in diverse ecological niches. They are often found in soil and aquatic environments, where they can engage in various nutrient cycling processes. The presence of flagella in S. acidaminiphila suggests an ability to navigate through its habitats, potentially enhancing its capacity to colonize different substrates or environments. The ecological significance of Stenotrophomonas acidaminiphila, particularly in its role within microbial communities, may include contributions to the degradation of organic matter and interactions with other microbial species. Understanding its traits, such as motility and genomic organization, can provide insights into how this bacterium adapts to its environment and interacts within its ecosystem. Thus, S. acidaminiphila represents an important subject of study for ecological and microbiological research.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas acidaminiphila
Strainstrain JCM 13310

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stenotrophomonas acidaminiphila strain JCM 13310 contig_126, whole

Gene Summary

Adenine Count

613163 bp

Thymine Count

616687 bp

Guanine Count

1359853 bp

Cytosine Count

1352817 bp

Genome Length

3942520 bp

Protein-coding Genes

3354 genes

Non-Coding Genes

137 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
competence protein comfABB33_13400Not AvailableNegative2959051 - 295977925638.6
biotin synthaseABB33_13405Not AvailablePositive2959829 - 296085737285.5
8-amino-7-oxononanoate synthaseABB33_13410Not AvailablePositive2960963 - 296217443454.2
pimelyl-acp methyl ester esteraseABB33_13415Not AvailablePositive2962191 - 296295827423.0
malonyl-coa o-methyltransferaseABB33_13420Not AvailablePositive2963044 - 296393432739.3
isopropylmalate/homocitrate/citramalate synthaseABB33_13425Not AvailableNegative2963992 - 296442015794.1
protein sana-like proteinABB33_13430Not AvailableNegative2964455 - 296505722795.7
serine dehydrataseABB33_13435Not AvailableNegative2965054 - 296601632661.4
hypothetical proteinABB33_13440Not AvailablePositive2966156 - 296673721124.8
trna uridine 5-carboxymethylaminomethyl modification proteinABB33_13445Not AvailablePositive2967335 - 296922468933.1

Displaying genes 2611 – 2620 of 3491 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.