Stenotrophomonas acidaminiphila strain JCM 13310

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas acidaminiphila strain JCM 13310 is a rod-shaped bacterium notable for its possession of flagella, which contributes to its motility. This strain has been documented in the genomic database with the accession number LDJO00000000.1. Importantly, it has a single replicon, indicating a streamlined genomic structure, which may play a role in its adaptability and survival in various environments. Stenotrophomonas species, including S. acidaminiphila, are recognized for their metabolic versatility and ability to thrive in diverse ecological niches. They are often found in soil and aquatic environments, where they can engage in various nutrient cycling processes. The presence of flagella in S. acidaminiphila suggests an ability to navigate through its habitats, potentially enhancing its capacity to colonize different substrates or environments. The ecological significance of Stenotrophomonas acidaminiphila, particularly in its role within microbial communities, may include contributions to the degradation of organic matter and interactions with other microbial species. Understanding its traits, such as motility and genomic organization, can provide insights into how this bacterium adapts to its environment and interacts within its ecosystem. Thus, S. acidaminiphila represents an important subject of study for ecological and microbiological research.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas acidaminiphila
Strainstrain JCM 13310

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stenotrophomonas acidaminiphila strain JCM 13310 contig_126, whole

Gene Summary

Adenine Count

613163 bp

Thymine Count

616687 bp

Guanine Count

1359853 bp

Cytosine Count

1352817 bp

Genome Length

3942520 bp

Protein-coding Genes

3354 genes

Non-Coding Genes

137 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein capiABB33_12830Not AvailableNegative2835076 - 283604135270.1
mitomycin resistance proteinABB33_12835Not AvailableNegative2836204 - 283650611364.9
chromosome partitioning protein parbABB33_12840Not AvailableNegative2836541 - 283745533017.9
chromosome partitioning proteinABB33_12845Not AvailableNegative2837455 - 283825228364.2
ribosomal rna small subunit methyltransferase gABB33_12850Not AvailableNegative2838460 - 283909822530.5
4-phosphopantetheinyl transferaseABB33_12855Not AvailableNegative2839121 - 283970822257.4
transglycosylaseABB33_12860Not AvailablePositive2839805 - 28400598864.52
exodeoxyribonuclease iiiABB33_12865Not AvailableNegative2840114 - 284088728853.1
molybdenum abc transporter atpaseABB33_12870Not AvailableNegative2840953 - 284161824430.8
abc transporter permeaseABB33_12875Not AvailableNegative2841608 - 284229423916.8

Displaying genes 2501 – 2510 of 3491 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.