Stenotrophomonas acidaminiphila strain JCM 13310

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas acidaminiphila strain JCM 13310 is a rod-shaped bacterium notable for its possession of flagella, which contributes to its motility. This strain has been documented in the genomic database with the accession number LDJO00000000.1. Importantly, it has a single replicon, indicating a streamlined genomic structure, which may play a role in its adaptability and survival in various environments. Stenotrophomonas species, including S. acidaminiphila, are recognized for their metabolic versatility and ability to thrive in diverse ecological niches. They are often found in soil and aquatic environments, where they can engage in various nutrient cycling processes. The presence of flagella in S. acidaminiphila suggests an ability to navigate through its habitats, potentially enhancing its capacity to colonize different substrates or environments. The ecological significance of Stenotrophomonas acidaminiphila, particularly in its role within microbial communities, may include contributions to the degradation of organic matter and interactions with other microbial species. Understanding its traits, such as motility and genomic organization, can provide insights into how this bacterium adapts to its environment and interacts within its ecosystem. Thus, S. acidaminiphila represents an important subject of study for ecological and microbiological research.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas acidaminiphila
Strainstrain JCM 13310

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stenotrophomonas acidaminiphila strain JCM 13310


Gene Summary

Adenine Count

613163 bp

Thymine Count

616687 bp

Guanine Count

1359853 bp

Cytosine Count

1352817 bp

Genome Length

3942520 bp

Protein-coding Genes

3354 genes

Non-Coding Genes

137 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
integraseABB33_00535Not AvailableNegative108326 - 11026972736.5
Trna-glyNot AvailableNot AvailablePositive110496 - 110571Not Available
cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferaseABB33_00545Not AvailableNegative110622 - 11123622709.4
excinuclease abc subunit cABB33_00550Not AvailableNegative111244 - 11316369979.8
nhl repeat proteinABB33_00555Not AvailableNegative113160 - 11457550779.8
phosphotyrosine protein phosphataseABB33_00560Not AvailableNegative114572 - 11506017295.6
3-deoxy-manno-octulosonate cytidylyltransferaseABB33_00565Not AvailableNegative115057 - 11583027434.9
tetraacyldisaccharide 4'-kinaseABB33_00570Not AvailableNegative116050 - 11707236959.6
lipid transporter atp-binding/permeaseABB33_00575Not AvailableNegative117072 - 11881763693.0
biopolymer transporterABB33_00580Not AvailableNegative118814 - 11923615693.9

Displaying genes 221 – 230 of 3491 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.