Stenotrophomonas acidaminiphila strain JCM 13310

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas acidaminiphila strain JCM 13310 is a rod-shaped bacterium notable for its possession of flagella, which contributes to its motility. This strain has been documented in the genomic database with the accession number LDJO00000000.1. Importantly, it has a single replicon, indicating a streamlined genomic structure, which may play a role in its adaptability and survival in various environments. Stenotrophomonas species, including S. acidaminiphila, are recognized for their metabolic versatility and ability to thrive in diverse ecological niches. They are often found in soil and aquatic environments, where they can engage in various nutrient cycling processes. The presence of flagella in S. acidaminiphila suggests an ability to navigate through its habitats, potentially enhancing its capacity to colonize different substrates or environments. The ecological significance of Stenotrophomonas acidaminiphila, particularly in its role within microbial communities, may include contributions to the degradation of organic matter and interactions with other microbial species. Understanding its traits, such as motility and genomic organization, can provide insights into how this bacterium adapts to its environment and interacts within its ecosystem. Thus, S. acidaminiphila represents an important subject of study for ecological and microbiological research.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas acidaminiphila
Strainstrain JCM 13310

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stenotrophomonas acidaminiphila strain JCM 13310 contig_126, whole

Gene Summary

Adenine Count

613163 bp

Thymine Count

616687 bp

Guanine Count

1359853 bp

Cytosine Count

1352817 bp

Genome Length

3942520 bp

Protein-coding Genes

3354 genes

Non-Coding Genes

137 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acetyl-coa acetyltransferaseABB33_07540Not AvailablePositive1656839 - 165804742176.0
utp--glucose-1-phosphate uridylyltransferaseABB33_07545Not AvailableNegative1658434 - 165931231785.3
multidrug mfs transporterABB33_07550Not AvailableNegative1659312 - 166121369239.1
lipopolysaccharide biosynthesis proteinABB33_07555Not AvailableNegative1661217 - 166220334407.7
tetratricopeptide repeat proteinABB33_07560Not AvailableNegative1662207 - 166338544362.8
membrane proteinABB33_07565Not AvailableNegative1663392 - 16636829729.34
integration host factor subunit betaABB33_07570Not AvailableNegative1663762 - 166406711051.5
30s ribosomal protein s1ABB33_07575Not AvailableNegative1664157 - 166584861549.1
cytidylate kinaseABB33_07580Not AvailableNegative1666042 - 166671924193.9
50s ribosomal protein l36ABB33_07585Not AvailablePositive1666909 - 16670344856.19

Displaying genes 1461 – 1470 of 3491 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.