Stenotrophomonas acidaminiphila strain JCM 13310

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas acidaminiphila strain JCM 13310 is a rod-shaped bacterium notable for its possession of flagella, which contributes to its motility. This strain has been documented in the genomic database with the accession number LDJO00000000.1. Importantly, it has a single replicon, indicating a streamlined genomic structure, which may play a role in its adaptability and survival in various environments. Stenotrophomonas species, including S. acidaminiphila, are recognized for their metabolic versatility and ability to thrive in diverse ecological niches. They are often found in soil and aquatic environments, where they can engage in various nutrient cycling processes. The presence of flagella in S. acidaminiphila suggests an ability to navigate through its habitats, potentially enhancing its capacity to colonize different substrates or environments. The ecological significance of Stenotrophomonas acidaminiphila, particularly in its role within microbial communities, may include contributions to the degradation of organic matter and interactions with other microbial species. Understanding its traits, such as motility and genomic organization, can provide insights into how this bacterium adapts to its environment and interacts within its ecosystem. Thus, S. acidaminiphila represents an important subject of study for ecological and microbiological research.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas acidaminiphila
Strainstrain JCM 13310

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stenotrophomonas acidaminiphila strain JCM 13310


Gene Summary

Adenine Count

613163 bp

Thymine Count

616687 bp

Guanine Count

1359853 bp

Cytosine Count

1352817 bp

Genome Length

3942520 bp

Protein-coding Genes

3354 genes

Non-Coding Genes

137 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinABB33_06405Not AvailableNegative1418590 - 141892811499.1
membrane proteinABB33_06410Not AvailableNegative1419152 - 141953213347.3
hypothetical proteinABB33_06415Not AvailableNegative1419656 - 142036025716.3
hypothetical proteinABB33_06420Not AvailableNegative1420382 - 142242173252.0
n-acetylmuramoyl-l-alanine amidaseABB33_06425Not AvailableNegative1422480 - 142323227094.1
tonb-dependent receptorABB33_06430Not AvailableNegative1423382 - 1426270104278.0
hypothetical proteinABB33_06435Not AvailablePositive1426303 - 142664712215.7
penicillin-binding proteinABB33_06440Not AvailableNegative1426792 - 142834856370.5
n-acetylmuramoyl-l-alanine amidaseABB33_06445Not AvailableNegative1428366 - 142913328265.6
diaminopimelate decarboxylaseABB33_06450Not AvailableNegative1429205 - 143048545356.0

Displaying genes 1351 – 1360 of 3491 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.