Pseudoxanthomonas dokdonensis strain DSM 21858

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Pseudoxanthomonas

Description

Pseudoxanthomonas dokdonensis strain DSM 21858 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is non-motile and does not form spores, which distinguishes it from other bacterial taxa that may possess these traits. It has an optimal growth temperature of 29°C, placing it within the mesophilic range, which is typically between 20°C and 45°C. This suggests that P. dokdonensis thrives in moderate temperature conditions, conducive to its survival and metabolic activities. The strain is notable for having a single replicon, indicating a streamlined genomic organization that may contribute to its adaptability and efficiency in nutrient utilization. Its accession number is LDJL00000000.1, which is essential for referencing its genetic information and facilitating further research. The aerobic nature of P. dokdonensis highlights its ecological role in environments where oxygen is available, potentially contributing to biogeochemical cycles. The non-spore-forming characteristic suggests that it may have specific ecological niches where it can thrive without the need for sporulation as a survival strategy. Overall, the traits of Pseudoxanthomonas dokdonensis strain DSM 21858 reflect its adaptation to a stable, oxygen-rich environment, providing insights into its ecological significance and potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusPseudoxanthomonas
SpeciesPseudoxanthomonas dokdonensis
Strainstrain DSM 21858

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoxanthomonas dokdonensis strain DSM 21858


Gene Summary

Adenine Count

629888 bp

Thymine Count

632286 bp

Guanine Count

1148575 bp

Cytosine Count

1142909 bp

Genome Length

3553658 bp

Protein-coding Genes

3003 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinABB29_00005Not AvailablePositive1 - 1856969.6
tyrosine--trna ligaseABB29_00010Q8PFT1Negative286 - 149444070.5
membrane proteinABB29_00015Not AvailablePositive1680 - 313152970.3
anhydro-n-acetylmuramic acid kinaseABB29_00020Q4UPQ7Positive3231 - 436439551.0
hypothetical proteinABB29_00025Not AvailableNegative4410 - 46408549.33
mfs transporterABB29_00030P0AE17Positive4733 - 605547121.2
dna-(apurinic or apyrimidinic site) lyaseABB29_00035O26314Negative6080 - 686830061.9
orotate phosphoribosyltransferaseABB29_00040Q4UPQ3Positive7014 - 770024299.9
hypothetical proteinABB29_00045Not AvailablePositive7724 - 839224898.4
phosphomannomutaseABB29_00050Q02E40Negative8498 - 1078081451.1

Displaying genes 1 – 10 of 3058 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

201 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 201 metabolites

Health Effects

No health effects information available for this bacterium.