Desulfocarbo indianensis strain SCBM

anaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfarculia

Order

Desulfarculales

Family

Desulfarculaceae

Genus

Desulfocarbo

Description

Desulfocarbo indianensis strain SCBM is an anaerobic bacterium, meaning it thrives in environments devoid of oxygen. This characteristic is crucial for its survival and metabolic processes, as it likely relies on alternative electron acceptors for energy production. The strain possesses a single replicon, which indicates that it has a streamlined genomic organization. This can be advantageous for the bacterium in stable environments where rapid growth and reproduction are necessary. The genomic data for Desulfocarbo indianensis strain SCBM is cataloged under the accession number LBMP00000000.1, providing a reference for further genomic studies and comparisons with related species. Desulfocarbo species, including D. indianensis, are known to play a significant role in the sulfur cycle, particularly in anaerobic environments. They are capable of utilizing sulfate as an electron acceptor, which is essential for the reduction of sulfur compounds. This metabolic capability not only impacts the local biogeochemistry but also influences the dynamics of microbial communities in their habitats. In summary, the anaerobic nature and genomic characteristics of Desulfocarbo indianensis strain SCBM underscore its ecological role in sulfur cycling within anaerobic environments. Its ability to thrive in such conditions highlights the diversity of metabolic strategies employed by microorganisms to adapt to specific ecological niches.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfarculia
OrderDesulfarculales
FamilyDesulfarculaceae
GenusDesulfocarbo
SpeciesDesulfocarbo indianensis
Strainstrain SCBM

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Desulfocarbo indianensis strain SCBM scaffold335.1, whole genome

Gene Summary

Adenine Count

946379 bp

Thymine Count

943211 bp

Guanine Count

1623247 bp

Cytosine Count

1600962 bp

Genome Length

5114044 bp

Protein-coding Genes

4212 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Baseplate hub + tail lysozymeAAU61_11215Not AvailablePositive2558462 - 255951139361.5
hypothetical proteinAAU61_11220Not AvailablePositive2559524 - 255989814330.3
Paar repeat-containing proteinAAU61_11225Not AvailablePositive2559895 - 25601588769.49
hypothetical proteinAAU61_11230Not AvailablePositive2560169 - 256047711231.3
hypothetical proteinAAU61_11235Not AvailablePositive2560474 - 256148436398.2
hypothetical proteinAAU61_11240Not AvailablePositive2561497 - 256238731581.1
Putative gpw/gp25 family proteinAAU61_11245Not AvailablePositive2562387 - 256330434621.6
elongation factor tuAAU61_00005Not AvailableNegative1 - 31811531.8
Trna-thrNot AvailableNot AvailablePositive469 - 544Not Available
Trna-tyrNot AvailableNot AvailablePositive673 - 757Not Available

Displaying genes 11 – 20 of 4273 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

282 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 282 metabolites

Health Effects

No health effects information available for this bacterium.