Bacteroidales bacterium Barb4

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Genus

Description

The Bacteroidales bacterium Barb4 is characterized by having a single replicon, indicating a streamlined genome structure. This trait may suggest a specialized adaptation to its ecological niche, which is common among members of the Bacteroidales order, known for their roles in various environments including the human gut and other ecosystems. The accession number for this bacterium is LBCX00000000.1, which serves as a reference for researchers looking to access genomic data and further information regarding its genetic makeup. The Bacteroidales order is typically associated with the degradation of complex polysaccharides, playing a crucial role in nutrient cycling and energy flow within ecosystems. In summary, the single replicon and the classification of Barb4 within the Bacteroidales suggest that it may have evolved specific metabolic capabilities that enable it to thrive in its environment. Understanding such traits can provide insights into the ecological roles of Bacteroidales bacteria, particularly in their contributions to digestion and nutrient recycling in various habitats.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroidales bacterium Barb4 Barb4_contig_2731, whole genome

Gene Summary

Adenine Count

870161 bp

Thymine Count

864222 bp

Guanine Count

803773 bp

Cytosine Count

789432 bp

Genome Length

3327588 bp

Protein-coding Genes

3850 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative adenylyltransferase/sulfurtransferase moezBarb4_02724Not AvailableNegative2343290 - 234412629486.7
atp adenylyltransferase (5',5'''-p-1,p-4-tetraphosphate phosphorylase ii)Barb4_02725Not AvailableNegative2344134 - 234481726086.1
hypothetical proteinBarb4_02726Not AvailablePositive2344951 - 23451005684.67
cold shock domain protein cspdBarb4_02727Not AvailablePositive2345307 - 234740683086.4
putative aldolase lsrfBarb4_02728Not AvailableNegative2347622 - 234849131187.9
pts-dependent dihydroxyacetone kinase, adp-binding subunit dhalBarb4_02729Not AvailableNegative2348518 - 234914121530.8
pts-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit dhakBarb4_02730Not AvailableNegative2349145 - 235015836169.0
hypothetical proteinBarb4_02731Not AvailableNegative2350226 - 235054011616.0
hypothetical proteinBarb4_02732Not AvailablePositive2350856 - 235126914537.6
hypothetical proteinBarb4_02733Not AvailablePositive2351494 - 23515983799.8

Displaying genes 2561 – 2570 of 3906 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

17 records
Metabolite IDMetabolite nameStructureCAS number
BASm00014072,5-dichlorohydroquinoneC6H4Cl2O2Chemical structure of 2,5-dichlorohydroquinoneNot available
Average179Da
Monoisotopic177.9588348Da
BASm00016432,5-dichlorocyclohexa-2,5-dien-1,4-diolC6H6Cl2O2Chemical structure of 2,5-dichlorocyclohexa-2,5-dien-1,4-diolNot available
Average181.01Da
Monoisotopic179.9744848Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002759dTDP-beta-L-rhamnoseC16H24N2O15P2Not availableNot available
Average546.316Da
Monoisotopic546.066289237Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da
BASm00034334-amino-4-deoxychorismateC10H10NO5Chemical structure of 4-amino-4-deoxychorismate133442-18-9
Average224.193Da
Monoisotopic224.056446006Da
BASm0003789S-sulfanylglutathioneC10H17N3O6S2Chemical structure of S-sulfanylglutathioneNot available
Average339.38Da
Monoisotopic339.0558776Da

Displaying 1–10 of 17 metabolites

Health Effects

No health effects information available for this bacterium.