Bacteroidales bacterium Barb4

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Genus

Description

The Bacteroidales bacterium Barb4 is characterized by having a single replicon, indicating a streamlined genome structure. This trait may suggest a specialized adaptation to its ecological niche, which is common among members of the Bacteroidales order, known for their roles in various environments including the human gut and other ecosystems. The accession number for this bacterium is LBCX00000000.1, which serves as a reference for researchers looking to access genomic data and further information regarding its genetic makeup. The Bacteroidales order is typically associated with the degradation of complex polysaccharides, playing a crucial role in nutrient cycling and energy flow within ecosystems. In summary, the single replicon and the classification of Barb4 within the Bacteroidales suggest that it may have evolved specific metabolic capabilities that enable it to thrive in its environment. Understanding such traits can provide insights into the ecological roles of Bacteroidales bacteria, particularly in their contributions to digestion and nutrient recycling in various habitats.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroidales bacterium Barb4 Barb4_contig_2731, whole genome

Gene Summary

Adenine Count

870161 bp

Thymine Count

864222 bp

Guanine Count

803773 bp

Cytosine Count

789432 bp

Genome Length

3327588 bp

Protein-coding Genes

3850 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphoglucomutaseBarb4_02365Not AvailableNegative2076473 - 207825766163.1
hypothetical proteinBarb4_02366Not AvailableNegative2078283 - 207957548961.9
ribosomal large subunit pseudouridine synthase dBarb4_02367Not AvailableNegative2079656 - 208058535161.5
fumarate hydratase class i, aerobicBarb4_02368Not AvailableNegative2080605 - 208224859664.2
serine carboxypeptidaseBarb4_02369Not AvailableNegative2082300 - 208369452917.5
hypothetical proteinBarb4_02370Not AvailablePositive2083954 - 208458623515.4
putative o-linked n-acetylglucosamine transferase, spindly familyBarb4_02371Not AvailablePositive2084664 - 208619958564.7
yihy family proteinBarb4_02372Not AvailableNegative2086200 - 208758551975.0
ribonuclease rBarb4_02373Not AvailableNegative2087601 - 208977882255.2
cadmium, cobalt and zinc/h(+)-k(+) antiporterBarb4_02374Not AvailableNegative2089802 - 209069832083.1

Displaying genes 2261 – 2270 of 3906 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

17 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00014072,5-dichlorohydroquinoneC6H4Cl2O2Chemical structure of 2,5-dichlorohydroquinoneNot available
Average179Da
Monoisotopic177.9588348Da
BASm00016432,5-dichlorocyclohexa-2,5-dien-1,4-diolC6H6Cl2O2Chemical structure of 2,5-dichlorocyclohexa-2,5-dien-1,4-diolNot available
Average181.01Da
Monoisotopic179.9744848Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002759dTDP-beta-L-rhamnoseC16H24N2O15P2Not availableNot available
Average546.316Da
Monoisotopic546.066289237Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da
BASm00034334-amino-4-deoxychorismateC10H10NO5Chemical structure of 4-amino-4-deoxychorismate133442-18-9
Average224.193Da
Monoisotopic224.056446006Da
BASm0003789S-sulfanylglutathioneC10H17N3O6S2Chemical structure of S-sulfanylglutathioneNot available
Average339.38Da
Monoisotopic339.0558776Da

Displaying 1–10 of 17 metabolites

Health Effects

No health effects information available for this bacterium.