Sphingomonas sp. Ag1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Ag1 is characterized as a rod-shaped bacterium that exhibits motility due to the presence of flagella. This morphological trait is significant as it facilitates movement through various environments, potentially influencing its ecological interactions and nutrient acquisition. The genomic structure of Sphingomonas sp. Ag1 is notable for having a single replicon, which contributes to its genetic stability and replication efficiency. The genome of this organism is accessible through the accession number LAZX00000000.1, allowing for further study and analysis of its genetic makeup. The ecological role of Sphingomonas sp. Ag1 can be inferred from its classification within the Sphingomonadaceae family, known for their diverse metabolic capabilities, including the degradation of complex organic compounds. This trait suggests that Sphingomonas sp. Ag1 may play a role in bioremediation processes, contributing to the breakdown of pollutants in various environments. In summary, Sphingomonas sp. Ag1 showcases key traits such as its rod shape, flagella presence, and single replicon structure, which together may enhance its adaptability and ecological significance in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Ag1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Ag1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Ag1


Gene Summary

Adenine Count

668657 bp

Thymine Count

668342 bp

Guanine Count

1309318 bp

Cytosine Count

1287628 bp

Genome Length

3933945 bp

Protein-coding Genes

3565 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
molybdopterin dehydrogenaseXM50_18095P77324Positive3746968 - 374791833661.5
xanthine dehydrogenaseXM50_18100Q8X6J4Positive3747923 - 375014278570.1
acyl-coa thioesteraseXM50_18105Q07792Negative3750154 - 375079523105.5
abc transporterXM50_18110Q39T41Positive3750924 - 375160123444.5
abc transporter permeaseXM50_18115Not AvailablePositive3751598 - 375408786063.3
dna repair proteinXM50_18120Q8UJK7Positive3754151 - 375524239730.2
hypothetical proteinXM50_18125Not AvailableNegative3755252 - 37554376383.21
hypothetical proteinXM50_18130Not AvailableNegative3755878 - 375734152010.4
hypothetical proteinXM50_18135Not AvailableNegative3757429 - 376005994922.3
hypothetical proteinXM50_18140Not AvailablePositive3760493 - 376172844545.7

Displaying genes 3451 – 3460 of 3620 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

265 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 265 metabolites

Health Effects

No health effects information available for this bacterium.