Sphingomonas sp. Ag1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Ag1 is characterized as a rod-shaped bacterium that exhibits motility due to the presence of flagella. This morphological trait is significant as it facilitates movement through various environments, potentially influencing its ecological interactions and nutrient acquisition. The genomic structure of Sphingomonas sp. Ag1 is notable for having a single replicon, which contributes to its genetic stability and replication efficiency. The genome of this organism is accessible through the accession number LAZX00000000.1, allowing for further study and analysis of its genetic makeup. The ecological role of Sphingomonas sp. Ag1 can be inferred from its classification within the Sphingomonadaceae family, known for their diverse metabolic capabilities, including the degradation of complex organic compounds. This trait suggests that Sphingomonas sp. Ag1 may play a role in bioremediation processes, contributing to the breakdown of pollutants in various environments. In summary, Sphingomonas sp. Ag1 showcases key traits such as its rod shape, flagella presence, and single replicon structure, which together may enhance its adaptability and ecological significance in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Ag1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Ag1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Ag1 JX01_contig_12, whole genome shotgun

Gene Summary

Adenine Count

668657 bp

Thymine Count

668342 bp

Guanine Count

1309318 bp

Cytosine Count

1287628 bp

Genome Length

3933945 bp

Protein-coding Genes

3565 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
colicin v production proteinXM50_10070Not AvailablePositive2081756 - 208233119668.3
nitrogen-fixing protein nifuXM50_10075Not AvailablePositive2082328 - 208276515274.0
sodium:proton exchangerXM50_10080B7MCW6Positive2082765 - 208452862492.5
membrane proteinXM50_10085Q5HRG3Positive2084525 - 208485711284.1
3-dehydroquinate synthaseXM50_10090Q5NPY8Negative2085052 - 208615238333.1
shikimate kinaseXM50_10095Q9A435Negative2086149 - 208671220619.9
hypothetical proteinXM50_10100Not AvailablePositive2086913 - 208869762020.4
recombinase xerdXM50_10105Q2NB52Positive2088702 - 208959832399.2
acetyl-coa carboxylase subunit alphaXM50_10110A5V3X0Positive2089608 - 209056133751.4
pilus assembly proteinXM50_10115Not AvailableNegative2090634 - 20908105990.47

Displaying genes 1901 – 1910 of 3620 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

265 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 265 metabolites

Health Effects

No health effects information available for this bacterium.