Paenibacillus sp. DMB20 mira_66

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus sp. DMB20 mira_66 is characterized by having a single replicon, which is significant for its genomic organization and replication process. The genomic data of this strain is accessible under the accession number LAZU00000000.1. Paenibacillus species are known for their diverse metabolic capabilities and ecological roles, often contributing to soil health and plant growth promotion. They are commonly found in various environmental niches, including soil and rhizospheres, where they can influence nutrient cycling and organic matter decomposition. The presence of Paenibacillus sp. DMB20 mira_66 in such environments may suggest its potential role in promoting soil fertility and supporting plant-microbe interactions. Understanding the genomic structure of Paenibacillus sp. DMB20 mira_66, particularly its single replicon, can provide insights into the adaptability and metabolic pathways of this microorganism, highlighting its ecological significance. Further research could explore its specific functions within its habitat, contributing to our knowledge of microbial diversity and ecosystem dynamics.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. DMB20
Strainmira_66

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus sp. DMB20 mira_66


Gene Summary

Adenine Count

1664714 bp

Thymine Count

1636691 bp

Guanine Count

1711378 bp

Cytosine Count

1634382 bp

Genome Length

6647181 bp

Protein-coding Genes

4812 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive304 - 420Not Available
glutamate synthaseXI25_00015O34399Negative2852 - 433954427.7
thymidylate synthaseXI25_00025A4INY1Negative5218 - 601230302.2
dienelactone hydrolaseXI25_00035P11961Negative7781 - 910046713.7
2-oxoisovalerate dehydrogenaseXI25_00040P21874Negative9131 - 1010835372.8
5s ribosomal rnaNot AvailableNot AvailablePositive10546 - 10662Not Available
pyruvate dehydrogenaseXI25_00045P21873Negative10270 - 1133739718.5
enterochelin esteraseXI25_00050Not AvailablePositive11590 - 1232128476.9
phosphotyrosine protein phosphataseXI25_00055O35016Negative12574 - 1303817248.6
membrane proteinXI25_00060O32216Negative13106 - 1374422868.7

Displaying genes 81 – 90 of 4964 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

209 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da

Displaying 1–10 of 209 metabolites

Health Effects

No health effects information available for this bacterium.