Paenibacillus sp. DMB20 mira_66

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus sp. DMB20 mira_66 is characterized by having a single replicon, which is significant for its genomic organization and replication process. The genomic data of this strain is accessible under the accession number LAZU00000000.1. Paenibacillus species are known for their diverse metabolic capabilities and ecological roles, often contributing to soil health and plant growth promotion. They are commonly found in various environmental niches, including soil and rhizospheres, where they can influence nutrient cycling and organic matter decomposition. The presence of Paenibacillus sp. DMB20 mira_66 in such environments may suggest its potential role in promoting soil fertility and supporting plant-microbe interactions. Understanding the genomic structure of Paenibacillus sp. DMB20 mira_66, particularly its single replicon, can provide insights into the adaptability and metabolic pathways of this microorganism, highlighting its ecological significance. Further research could explore its specific functions within its habitat, contributing to our knowledge of microbial diversity and ecosystem dynamics.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. DMB20
Strainmira_66

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus sp. DMB20 mira_66, whole genome shotgun sequence.

Gene Summary

Adenine Count

1664714 bp

Thymine Count

1636691 bp

Guanine Count

1711378 bp

Cytosine Count

1634382 bp

Genome Length

6647181 bp

Protein-coding Genes

4812 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcriptional regulatorXI25_04595Q2FY79Positive1001332 - 100203627129.9
transcriptional regulatorXI25_04600P35164Positive1002033 - 100344852472.1
hypothetical proteinXI25_04605Not AvailablePositive1003445 - 10036457427.69
cytochrome aa3 quinol oxidase subunit ivXI25_04610Not AvailableNegative1003942 - 100422910436.3
cytochrome o ubiquinol oxidase subunit iiiXI25_04615P34958Negative1004231 - 100482722212.5
quinol oxidase subunit 2XI25_04625Q81HT3Negative1006838 - 100774933921.1
nitrous oxide regulatorXI25_04630P25728Negative1008351 - 100868613156.1
manganese transporterXI25_04645O34385Positive1010633 - 101158334238.1
manganese abc transporter atp-binding proteinXI25_04650O34338Positive1011586 - 101231426935.6
manganese abc transporterXI25_04655O35024Positive1012320 - 101324933223.8

Displaying genes 851 – 860 of 4964 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

209 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da

Displaying 1–10 of 209 metabolites

Health Effects

No health effects information available for this bacterium.