Sphingomonas sp. SRS2

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. SRS2 is a rod-shaped bacterium that inhabits agricultural soil. This species is characterized by the presence of flagella, which facilitate motility in its soil environment. It possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in diverse soil conditions. The habitat of Sphingomonas sp. SRS2 is particularly significant, as agricultural soils are critical environments for microbial diversity and function. Microorganisms in these soils play essential roles in nutrient cycling, organic matter decomposition, and plant growth promotion. The presence of Sphingomonas sp. SRS2 in such environments suggests it may contribute to the ecological balance and health of agricultural ecosystems. The genomic data available for this species is cataloged under the accession LARW00000000.1, which provides a basis for further research into its genetic makeup and functional capabilities. Understanding the traits and ecological roles of Sphingomonas sp. SRS2 can enhance our knowledge of soil microbiomes and their contributions to agriculture, including potential applications in bioremediation and sustainable farming practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. SRS2
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. SRS2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatagricultural soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. SRS2 contig168, whole genome shotgun sequence.

Gene Summary

Adenine Count

835913 bp

Thymine Count

835309 bp

Guanine Count

1476241 bp

Cytosine Count

1484025 bp

Genome Length

4631488 bp

Protein-coding Genes

4303 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5-aminolevulinate synthaseWP12_09705P08262Negative1923514 - 192472843849.7
glutamate racemaseWP12_09710Q1GTU9Negative1924843 - 192563727442.1
glycerol-3-phosphate acyltransferaseWP12_09715Q5NN91Positive1925807 - 192638819771.8
dna processing protein dpraWP12_09720Q8DPI7Positive1926385 - 192748237753.9
hypothetical proteinWP12_09725Not AvailableNegative1927499 - 192790614718.0
dna topoisomerase iWP12_09730Q9X3X7Positive1928123 - 193070293838.4
tryptophanyl-trna synthetaseWP12_09735Q9AC05Negative1930801 - 193179635681.0
hypothetical proteinWP12_09740Not AvailablePositive1932468 - 193406660368.9
membrane proteinWP12_09745O05467Negative1934078 - 193565556501.8
preprotein translocase subunit secbWP12_09750A5VD08Negative1935789 - 193628918076.3

Displaying genes 1851 – 1860 of 4370 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

282 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 282 metabolites

Health Effects

No health effects information available for this bacterium.