Pseudomonas fluorescens strain C8

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas fluorescens strain C8 is a gram-negative, rod-shaped bacterium that functions as a heterotroph and thrives in aerobic conditions. This strain is characterized by its single-cell arrangement and mobility, facilitated by the presence of flagella. It occupies a mesophilic temperature range, with an optimal growth temperature of 25°C. P. fluorescens C8 has a unique cellular structure, consisting of two membranes and a single replicon. This bacterium is free-living and has a diverse range of habitats. It interacts with various hosts, including Homo sapiens, Metazoa, and a variety of plants such as Triticum aestivum (wheat), Solanum tuberosum (potato), and Solanum lycopersicum (tomato), among others. P. fluorescens C8 has been noted to cause bacterial infections in animals, indicating its pathogenic potential. The ecological significance of Pseudomonas fluorescens C8 lies in its ability to inhabit multiple environments and interact with a wide array of organisms, including both plants and animals. Its role as a free-living bacterium suggests it may play a part in nutrient cycling and soil health. Additionally, its pathogenicity in animals underscores the importance of monitoring and understanding its interactions within ecosystems, particularly in agricultural settings where it may affect crop health and contribute to disease dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas fluorescens
Strainstrain C8

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas fluorescens strain C8
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa, Viridiplantae
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas fluorescens strain C8

Gene Summary

Adenine Count

1248963 bp

Thymine Count

1265387 bp

Guanine Count

1900128 bp

Cytosine Count

1870278 bp

Genome Length

6287006 bp

Protein-coding Genes

5530 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amino acid abc transporter substrate-binding proteinVC35_24420P30859Positive5415257 - 541610230620.9
abc transporter permeaseVC35_24425O34671Positive5416147 - 541684225705.9
amino acid abc transporter permeaseVC35_24430Q52814Positive5416845 - 541753425387.1
amino acid abc transporter atp-binding proteinVC35_24435Not AvailablePositive5417539 - 541829727786.8
beta-lactamaseVC35_24440Q3JRV4Positive5418354 - 541921731818.7
pyridine nucleotide-disulfide oxidoreductaseVC35_24445Q9Y6N5Positive5419282 - 542056246590.4
membrane proteinVC35_24450Not AvailablePositive5420572 - 542137827551.9
transcriptional regulatorVC35_24455P03030Negative5421384 - 542232534526.0
diaminopimelate decarboxylaseVC35_24460P00861Positive5422448 - 542369245655.9
hypothetical proteinVC35_24470Not AvailablePositive5425509 - 54257277805.43

Displaying genes 4831 – 4840 of 5594 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

419 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 419 metabolites

Health Effects

Health ConditionRelationReference
Bacterial infectionsCausesPMC7578172

Displaying health effects 1 – 1 of 1 in total