Variovorax paradoxus strain TBEA6

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax paradoxus strain TBEA6 is a Gram-negative bacterium characterized by its rod-shaped morphology and aerobic growth requirements. This strain was isolated from mine spoil and soil, indicating its adaptation to environments that may be nutrient-poor and subject to contamination. The genomic structure of Variovorax paradoxus TBEA6 includes a single replicon, which is a noteworthy feature that can influence its replication and genetic stability. The accession number for this strain is JZWI00000000.1, providing a unique identifier for researchers seeking to access its genomic data for further study. In terms of ecological significance, the presence of Variovorax paradoxus in mine spoil and soil suggests a potential role in bioremediation processes. The ability of this bacterium to thrive in disturbed environments may be beneficial for the degradation of pollutants, contributing to soil health and ecosystem recovery. Furthermore, its aerobic nature implies that it may engage in metabolic processes that require oxygen, potentially influencing the microbial community dynamics in its habitat. This strain exemplifies the adaptability of bacteria to survive and play critical roles in diverse and challenging environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax paradoxus
Strainstrain TBEA6

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatmine spoil; soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax paradoxus strain TBEA6 VPARA_contig000112, whole genome

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative inner membrane transporter yedaVPARA_53350Not AvailableNegative5610930 - 561185331283.1
tyrocidine synthase 3VPARA_53360Not AvailableNegative5611846 - 5614887107922.0
d-amino acid dehydrogenase small subunitVPARA_53370Not AvailableNegative5614884 - 561667764451.1
oligopeptide transport atp-binding protein oppfVPARA_53380Not AvailableNegative5616674 - 561769937358.7
putative d,d-dipeptide transport atp-binding protein ddpdVPARA_53390Not AvailableNegative5617704 - 561871736109.3
putative d,d-dipeptide transport system permease protein ddpcVPARA_53400Not AvailableNegative5618714 - 561962532300.3
dipeptide transport system permease protein dppbVPARA_53410Not AvailableNegative5619622 - 562059935117.1
hypothetical proteinVPARA_53420Not AvailableNegative5620638 - 562167537044.7
periplasmic dipeptide transport protein precursorVPARA_53430Not AvailableNegative5621672 - 562326457609.8
melibiose operon regulatory proteinVPARA_53440Not AvailablePositive5623434 - 562430932213.1

Displaying genes 5331 – 5340 of 6847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.