Variovorax paradoxus strain TBEA6

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax paradoxus strain TBEA6 is a Gram-negative bacterium characterized by its rod-shaped morphology and aerobic growth requirements. This strain was isolated from mine spoil and soil, indicating its adaptation to environments that may be nutrient-poor and subject to contamination. The genomic structure of Variovorax paradoxus TBEA6 includes a single replicon, which is a noteworthy feature that can influence its replication and genetic stability. The accession number for this strain is JZWI00000000.1, providing a unique identifier for researchers seeking to access its genomic data for further study. In terms of ecological significance, the presence of Variovorax paradoxus in mine spoil and soil suggests a potential role in bioremediation processes. The ability of this bacterium to thrive in disturbed environments may be beneficial for the degradation of pollutants, contributing to soil health and ecosystem recovery. Furthermore, its aerobic nature implies that it may engage in metabolic processes that require oxygen, potentially influencing the microbial community dynamics in its habitat. This strain exemplifies the adaptability of bacteria to survive and play critical roles in diverse and challenging environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax paradoxus
Strainstrain TBEA6

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatmine spoil; soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax paradoxus strain TBEA6 VPARA_contig000112, whole genome

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthaseVPARA_29420Not AvailableNegative3080259 - 308153946131.5
cytoskeleton protein rodzVPARA_29430Not AvailableNegative3081536 - 308249532213.6
beta-barrel assembly-enhancing proteaseVPARA_29440Not AvailableNegative3082488 - 308334231651.5
dual-specificity rna methyltransferase rlmnVPARA_29450Not AvailableNegative3083347 - 308449542433.1
nucleoside diphosphate kinaseVPARA_29460Not AvailableNegative3084517 - 308494215263.3
ribosomal large subunit pseudouridine synthase bVPARA_29470Not AvailableNegative3085094 - 308691465134.1
hypothetical proteinVPARA_29480Not AvailableNegative3086911 - 308772929546.7
ribosomal large subunit pseudouridine synthase dVPARA_29490Not AvailableNegative3087857 - 308884035295.6
outer membrane protein assembly factor bamd precursorVPARA_29500Not AvailablePositive3088897 - 308970330193.6
putative atp-dependent helicase dingVPARA_29510Not AvailableNegative3089781 - 309183874586.2

Displaying genes 3001 – 3010 of 6847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.