Variovorax paradoxus strain TBEA6

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax paradoxus strain TBEA6 is a Gram-negative bacterium characterized by its rod-shaped morphology and aerobic growth requirements. This strain was isolated from mine spoil and soil, indicating its adaptation to environments that may be nutrient-poor and subject to contamination. The genomic structure of Variovorax paradoxus TBEA6 includes a single replicon, which is a noteworthy feature that can influence its replication and genetic stability. The accession number for this strain is JZWI00000000.1, providing a unique identifier for researchers seeking to access its genomic data for further study. In terms of ecological significance, the presence of Variovorax paradoxus in mine spoil and soil suggests a potential role in bioremediation processes. The ability of this bacterium to thrive in disturbed environments may be beneficial for the degradation of pollutants, contributing to soil health and ecosystem recovery. Furthermore, its aerobic nature implies that it may engage in metabolic processes that require oxygen, potentially influencing the microbial community dynamics in its habitat. This strain exemplifies the adaptability of bacteria to survive and play critical roles in diverse and challenging environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax paradoxus
Strainstrain TBEA6

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatmine spoil; soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax paradoxus strain TBEA6 VPARA_contig000112, whole genome

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
deoxyguanosinetriphosphate triphosphohydrolaseVPARA_10900Not AvailableNegative1136878 - 113800842610.3
3-dehydroquinate synthaseVPARA_10910Not AvailableNegative1138031 - 113914339124.5
shikimate kinase 1VPARA_10920Not AvailableNegative1139177 - 113972520149.3
type iv pilus biogenesis and competence protein pilq precursorVPARA_10930Not AvailableNegative1139749 - 114180973267.5
pilus assembly protein, pilpVPARA_10940Not AvailableNegative1141884 - 114242620184.4
pilus assembly protein, piloVPARA_10950Not AvailableNegative1142423 - 114310625352.3
fimbrial assembly protein (piln)VPARA_10960Not AvailableNegative1143114 - 114373422835.6
competence protein aVPARA_10970Not AvailableNegative1143731 - 114476837428.8
penicillin-binding protein 1aVPARA_10980Not AvailablePositive1145133 - 114745784329.9
protein cyayVPARA_10990Not AvailableNegative1147468 - 114780012027.0

Displaying genes 1151 – 1160 of 6847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.