Candidatus Brocadia sinica

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Candidatus Brocadiia

Order

Candidatus Brocadiales

Family

Candidatus Brocadiaceae

Genus

Candidatus Brocadia

Description

Candidatus Brocadia sinica is a notable species within the microbial community, characterized by having a single replicon. This trait is significant as it suggests a streamlined genomic organization, which may influence its metabolic capabilities and adaptability in various environments. The organism is cataloged under the accession number JZEK00000000.1, indicating its identification and classification in genomic databases. As a member of the anammox (anaerobic ammonium oxidation) bacteria, Candidatus Brocadia sinica plays a crucial role in the nitrogen cycle, particularly in the removal of nitrogen from wastewater and natural aquatic systems. This process is essential for mitigating nitrogen pollution, which can lead to eutrophication and other environmental issues. The unique features of Candidatus Brocadia sinica highlight its potential ecological importance. By participating in the anammox process, this bacterium contributes to the sustainable management of nitrogen, thus influencing nutrient dynamics in its habitat. Understanding the biology and ecology of Candidatus Brocadia sinica can provide insights into how microbial communities function in nutrient cycling and how they can be harnessed for biotechnological applications in wastewater treatment.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassCandidatus Brocadiia
OrderCandidatus Brocadiales
FamilyCandidatus Brocadiaceae
GenusCandidatus Brocadia
SpeciesCandidatus Brocadia sinica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Candidatus Brocadia sinica isolate OLB1 UZ01_contig000086,

Gene Summary

Adenine Count

1131272 bp

Thymine Count

1116409 bp

Guanine Count

825359 bp

Cytosine Count

822727 bp

Genome Length

3895767 bp

Protein-coding Genes

3650 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
site-specific tyrosine recombinaseUZ01_01146Not AvailablePositive1195121 - 119639849803.1
dna-directed rna polymerase sigma subunitUZ01_01147P33656Positive1196491 - 119733931792.1
hypothetical proteinUZ01_01148Not AvailablePositive1197878 - 119836618614.7
mor transcription activator family proteinUZ01_01149Not AvailablePositive1198356 - 119866411809.6
site-specific tyrosine recombinaseUZ01_01150Not AvailablePositive1199051 - 120010340532.1
Trna-proNot AvailableNot AvailablePositive1200119 - 1200196Not Available
atp-dependent metallopeptidaseUZ01_01152B1GZK7Positive1200372 - 120229771006.0
hypothetical proteinUZ01_01153B8CXG6Negative1202413 - 120316827501.2
hypothetical proteinUZ01_01154Not AvailableNegative1203207 - 120478461391.6
atp phosphoribosyltransferaseUZ01_01155Q8KB10Negative1204830 - 120570231942.9

Displaying genes 1151 – 1160 of 3701 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

167 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da

Displaying 1–10 of 167 metabolites

Health Effects

No health effects information available for this bacterium.