Bacillus amyloliquefaciens strain 12B

Gram-positiveRodMotileAerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Bacillaceae

Genus

Bacillus

Description

Bacillus amyloliquefaciens strain 12B is a Gram-positive, rod-shaped bacterium that thrives in soil environments. This strain is classified as an aerobe, requiring oxygen for its metabolic processes. It exhibits mobility due to the presence of flagella, allowing it to navigate its habitat effectively. Bacillus amyloliquefaciens strain 12B is mesophilic, indicating that it prefers moderate temperature ranges for optimal growth. This bacterium is free-living, establishing a biotic relationship with various hosts, including Homo sapiens (humans), Triticum aestivum (wheat), Oryza sativa (rice), and Salmo salar (Atlantic salmon). Its ability to form spores enhances its survival in diverse environmental conditions, contributing to its resilience in soil ecosystems. With a single replicon and a single membrane, Bacillus amyloliquefaciens strain 12B showcases a simple yet effective cellular structure that supports its ecological adaptability. The strain is cataloged under the accession number JZDI00000000.1, which provides a reference point for genetic and functional studies. In summary, Bacillus amyloliquefaciens strain 12B plays a significant role in soil ecosystems, particularly in its interactions with agricultural hosts. Its ability to form spores and its mobility may enhance plant health and productivity, suggesting an important ecological function in promoting soil fertility and supporting crop growth.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyBacillaceae
GenusBacillus
SpeciesBacillus amyloliquefaciens
Strainstrain 12B

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Bacillus amyloliquefaciens strain 12B
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipFree living
Host(s)Homo sapiens, Triticum aestivum, Oryza sativa
Cell arrangementNot Available
SporulationSporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacillus amyloliquefaciens strain 12B


Gene Summary

Adenine Count

2080385 bp

Thymine Count

2007017 bp

Guanine Count

1789163 bp

Cytosine Count

1720192 bp

Genome Length

7596758 bp

Protein-coding Genes

7873 genes

Non-Coding Genes

229 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive923367 - 923379Not Available
Mdmc o-methyltransferaseUZ38_04270Not AvailablePositive936454 - 93710725073.2
peptidase u32UZ38_04275Not AvailablePositive937114 - 93804335142.8
proteaseUZ38_04280Not AvailablePositive938061 - 93932947408.5
uridine kinaseUZ38_04285Not AvailablePositive939336 - 93996824396.5
IntegraseUZ38_04290Not AvailableNegative940033 - 94119345186.7
hypothetical proteinUZ38_04295Not AvailableNegative941199 - 9414539781.12
Helix-turn-helix transcriptional regulatorUZ38_04300Not AvailablePositive941500 - 94268146472.8
Immunity repressorUZ38_04305Not AvailableNegative943053 - 94344214912.5
Helix-turn-helix transcriptional regulatorUZ38_04310Not AvailablePositive943631 - 9438408001.8

Displaying genes 1 – 10 of 464 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

386 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 386 metabolites

Health Effects

No health effects information available for this bacterium.