Pseudomonas sp. 5

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. 5 is a bacterial strain characterized by having a single replicon, which is indicative of its genomic organization. The accession number for this strain is JYOC00000000.1, providing a reference for researchers interested in its genetic and functional attributes. Pseudomonas species are known for their metabolic diversity, enabling them to thrive in various environments, including soil, water, and as opportunistic pathogens in humans and animals. Pseudomonas sp. 5 may exhibit similar metabolic capabilities, although specific traits and pathways are not detailed in the provided information. The presence of a single replicon in Pseudomonas sp. 5 suggests a streamlined genomic structure, which can influence its adaptability and survival in fluctuating environments. This trait may allow for efficient replication and potentially faster growth rates under optimal conditions. Ecologically, Pseudomonas species, including Pseudomonas sp. 5, play significant roles in nutrient cycling and biodegradation, contributing to the breakdown of organic materials and pollutants in their habitats. Their metabolic versatility equips them to utilize a wide range of substrates, which can be beneficial for bioremediation efforts. In conclusion, Pseudomonas sp. 5, with its single replicon and its potential ecological roles, exemplifies the adaptability and importance of Pseudomonas species in various biological and environmental contexts. Further research into its specific metabolic pathways and ecological interactions could provide valuable insights into its contributions to microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas tussilaginis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. 5
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. 5 contig85, whole genome shotgun sequence.

Gene Summary

Adenine Count

1131015 bp

Thymine Count

1132762 bp

Guanine Count

1670030 bp

Cytosine Count

1668629 bp

Genome Length

5605119 bp

Protein-coding Genes

4800 genes

Non-Coding Genes

132 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Putative head maturation proteaseUB47_15655Q8Z6F3Negative3497634 - 349885142491.7
Portal proteinUB47_15660Not AvailableNegative3498854 - 350045858591.8
hypothetical proteinUB47_15665Not AvailableNegative3500461 - 35006768108.81
Terminase large subunitUB47_15670P36693Negative3500689 - 350261472005.7
Terminase small subunitUB47_15675Not AvailableNegative3502619 - 350314319613.7
pyocin r2, holinUB47_15680Not AvailableNegative3503279 - 350362612054.0
Dpra superfamily proteinUB47_18340Not AvailablePositive4059398 - 406051642170.4
recombinase recxUB47_18345Q1I6B8Negative4060530 - 406099717772.3
Dna strand exchange and recombination protein with protease and nuclease activityUB47_18350Q07447Negative4061006 - 406207637913.7
damage-inducible protein cinaUB47_18355P72227Negative4062180 - 406266216626.6

Displaying genes 11 – 20 of 4932 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

351 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da

Displaying 1–10 of 351 metabolites

Health Effects

No health effects information available for this bacterium.