Pseudomonas sp. 21

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. 21 is characterized by having a single replicon, which suggests a streamlined genomic organization. The strain is documented under the accession number JYOA00000000.1, indicating its sequence is available in a genomic database for further analysis and reference. Pseudomonas species are known for their metabolic diversity and adaptability, which allows them to thrive in various environments, including soil, water, and as plant pathogens. The ecological significance of Pseudomonas sp. 21 may lie in its potential roles in bioremediation, disease suppression, or nutrient cycling, typical of many members of the Pseudomonas genus. Understanding the genomic structure and sequence data available for Pseudomonas sp. 21 can offer insights into its ecological interactions and functional capabilities. The presence of a single replicon suggests a possible evolutionary adaptation that may confer specific advantages in its environment. Such traits are important for understanding the ecological roles that Pseudomonas sp. 21 may play, particularly in diverse microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. 21
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. 21
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. 21 contig43, whole genome shotgun sequence.

Gene Summary

Adenine Count

1084127 bp

Thymine Count

1091003 bp

Guanine Count

2071129 bp

Cytosine Count

2078537 bp

Genome Length

6326189 bp

Protein-coding Genes

5522 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tail protein iUB43_15585P26701Negative3404013 - 340462722886.6
Baseplate assembly proteinUB43_15590P51767Negative3404620 - 340551031707.4
Putative baseplate assembly protein wUB43_15595Not AvailableNegative3405507 - 340583311817.6
Putative baseplate assembly protein vUB43_15600Not AvailableNegative3405944 - 340650719536.0
Putative minor tail proteinUB43_15605Not AvailableNegative3406504 - 340703419246.0
holinUB43_15610Not AvailableNegative3407052 - 340739611753.6
gnat family acetyltraansferaseUB43_15615Not AvailableNegative3407713 - 340818617592.7
hypothetical proteinUB43_15620Not AvailableNegative3408270 - 340862913593.6
Conjugative transfer proteinUB43_15625Not AvailableNegative3408649 - 34088587669.98
Hth-type transcriptional regulator prtrUB43_15630Q06553Positive3409257 - 341002728040.2

Displaying genes 11 – 20 of 5604 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

358 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 358 metabolites

Health Effects

No health effects information available for this bacterium.