Bradyrhizobium sp. LTSPM299

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Bradyrhizobium

Description

Bradyrhizobium sp. LTSPM299 is a rod-shaped bacterium characterized by the presence of flagella, which contribute to its motility. This organism possesses a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation in its environmental niche. The strain is cataloged under the accession number JYMU00000000.1, which allows for its identification and further study within genomic databases. The rod shape of Bradyrhizobium sp. LTSPM299 is typical of many bacteria in the Rhizobiaceae family, which are known for their symbiotic relationships with leguminous plants. The motility conferred by flagella may enhance its ability to colonize root nodules, where it can engage in nitrogen fixation, a crucial process for converting atmospheric nitrogen into a form usable by plants. This ecological interaction not only benefits the plant host by improving its nutrient uptake but also contributes to soil fertility and ecosystem productivity. In summary, Bradyrhizobium sp. LTSPM299, with its rod shape, motility via flagella, and single replicon, exemplifies the specialized adaptations that facilitate its symbiotic role in agriculture and natural ecosystems. Understanding such traits can provide insight into the ecological functions of rhizobia and their importance in sustainable agriculture and soil health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium sp. LTSPM299
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bradyrhizobium sp. LTSPM299 NODE_100, whole genome shotgun

Gene Summary

Adenine Count

1690210 bp

Thymine Count

1691335 bp

Guanine Count

2852418 bp

Cytosine Count

2860215 bp

Genome Length

9094432 bp

Protein-coding Genes

7721 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinUP10_00060Not AvailableNegative12343 - 1320630963.3
homoserine acetyltransferaseUP10_00065Q89UL7Positive13543 - 1475144143.2
sam-dependent methyltransferaseUP10_00070Q7UG04Positive14748 - 1541324706.9
alpha/beta hydrolaseUP10_00075Not AvailableNegative15508 - 1638031951.2
amidaseUP10_00080Not AvailablePositive16612 - 1726822977.4
molybdenum cofactor sulfuraseUP10_00085Not AvailableNegative17296 - 1807228201.9
acetyltransferaseUP10_00090Q8ZPD3Negative18143 - 1865818637.4
laci family transcriptional regulatorUP10_00095Not AvailablePositive18728 - 1929420814.1
16s ribosomal rnaNot AvailableNot AvailablePositive19330 - 20829Not Available
atpase aaaUP10_00100Q89UL2Positive19488 - 2212796697.0

Displaying genes 11 – 20 of 172 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

15 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00019783-(4-hydroxyphenyl)pyruvateC9H7O4Chemical structure of 3-(4-hydroxyphenyl)pyruvateNot available
Average179.1495Da
Monoisotopic179.034433712Da
BASm0001989hopan-22-olC30H52OChemical structure of hopan-22-olNot available
Average428.745Da
Monoisotopic428.4018163Da
BASm0002727(1E)-4-oxobut-1-ene-1,2,4-tricarboxylateC7H3O7Chemical structure of (1E)-4-oxobut-1-ene-1,2,4-tricarboxylateNot available
Average199.096Da
Monoisotopic198.9895232Da
BASm0002909O-acetyl-L-homoserineC6H11NO4Chemical structure of O-acetyl-L-homoserine7540-67-2
Average161.1558Da
Monoisotopic161.0688078Da
BASm0003013atropineC17H24NO3Chemical structure of atropineNot available
Average290.382Da
Monoisotopic290.1750701Da
BASm00033572-oxo-2H-pyran-4,6-dicarboxylateC7H2O6Chemical structure of 2-oxo-2H-pyran-4,6-dicarboxylateNot available
Average182.088Da
Monoisotopic181.9862349Da
BASm0003491(2S)-2-acetolactateC5H7O4Chemical structure of (2S)-2-acetolactateNot available
Average131.108Da
Monoisotopic131.0349823Da
BASm00072677,8-dihydroxanthopterinC6H7N5O2Chemical structure of 7,8-dihydroxanthopterinNot available
Average181.155Da
Monoisotopic181.0599745Da
BASm00073665-hydroxyectoineC6H10N2O3Chemical structure of 5-hydroxyectoineNot available
Average158.1552Da
Monoisotopic158.0691422Da

Displaying 1–10 of 15 metabolites

Health Effects

No health effects information available for this bacterium.