Pseudomonas sp. 10-1B

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. 10-1B is characterized by having a single replicon, which indicates a streamlined genomic organization that may contribute to its adaptability in various environments. The organism is classified under the genus Pseudomonas, known for its metabolic versatility and ability to thrive in diverse ecological niches. The genomic accession for Pseudomonas sp. 10-1B is JYKS00000000.1, providing a reference for researchers interested in studying its genetic makeup and potential applications. Pseudomonas species are often associated with soil and water environments, where they play crucial roles in nutrient cycling and organic matter decomposition. The presence of a single replicon may suggest a more efficient replication and regulation of essential genes, potentially enhancing the organism's survival and growth in competitive environments. This trait, coupled with the ecological versatility commonly associated with Pseudomonas, highlights its potential role in bioremediation and biotechnological applications. In summary, Pseudomonas sp. 10-1B's single replicon structure may confer advantages in adaptability and survival, reinforcing the ecological significance of the Pseudomonas genus in environmental microbiology. Further studies on its genomic features could provide insights into its functional capabilities and interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. 10-1B
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. 10-1B
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. 10-1B contig_102, whole genome shotgun sequence.

Gene Summary

Adenine Count

1196591 bp

Thymine Count

1186740 bp

Guanine Count

1972978 bp

Cytosine Count

1990205 bp

Genome Length

6346514 bp

Protein-coding Genes

5361 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
copper oxidaseTZ03_07325Not AvailablePositive1666406 - 166778851583.6
zinc-binding proteinTZ03_07330Not AvailablePositive1667788 - 166826717054.8
murein transglycosylaseTZ03_07335Not AvailableNegative1668378 - 166983555013.7
phosphoribosylformylglycinamidine synthaseTZ03_07340Not AvailablePositive1670340 - 1674239140687.0
ngg1p interacting factor 3 protein, nif3TZ03_07345Not AvailablePositive1674243 - 167455411396.5
dtdp-glucose 4,6-dehydrataseTZ03_07350Not AvailableNegative1675101 - 167716173596.3
filamentous hemagglutininTZ03_07355Not AvailableNegative1677294 - 1681820159484.0
tps family activation/secretion proteinTZ03_07360Not AvailableNegative1681848 - 168353061802.9
erfk/ybis/ycfs/ynhg family proteinTZ03_07365Not AvailableNegative1683691 - 168424521192.6
adp-ribose pyrophosphataseTZ03_07370Not AvailableNegative1684268 - 168481921047.1

Displaying genes 1431 – 1440 of 5432 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.