Variovorax paradoxus strain MEDvA23

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax paradoxus strain MEDvA23 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain is primarily found in aerobic environments, specifically in mine spoil and soil habitats, which suggests its adaptation to environments that often experience disturbance from mining activities. The strain possesses a single replicon, indicating a streamlined genetic architecture that may contribute to its efficiency in utilizing available resources in its environment. The accessions for this strain are documented under the identifier JXQQ00000000.1, which provides a reference for further genetic and functional studies. Biologically, the presence of Variovorax paradoxus strain MEDvA23 in mine spoil ecosystems highlights its potential role in bioremediation. As it thrives in disturbed soils, it may contribute to the degradation of pollutants and the restoration of ecological balance in these challenging conditions. Its aerobic nature suggests that it may play a role in the microbial processes that depend on oxygen, potentially influencing nutrient cycling and soil health in its habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax paradoxus
Strainstrain MEDvA23

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatmine spoil; soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax paradoxus strain MEDvA23


Gene Summary

Adenine Count

1135217 bp

Thymine Count

1134728 bp

Guanine Count

2318338 bp

Cytosine Count

2318226 bp

Genome Length

6906509 bp

Protein-coding Genes

6027 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinRT97_00005Not AvailablePositive141 - 70721278.9
16s ribosomal rnaNot AvailableNot AvailablePositive392 - 1934Not Available
diacylglycerol kinaseRT97_00010Not AvailablePositive704 - 111114629.0
log family proteinRT97_00015Not AvailablePositive1143 - 173321660.0
nitrogen regulatory protein p-iiRT97_00020Not AvailableNegative1779 - 211712362.0
23s ribosomal rnaNot AvailableNot AvailablePositive2510 - 5399Not Available
nad synthetaseRT97_00025Not AvailableNegative2114 - 381161077.1
hypothetical proteinRT97_00030Not AvailablePositive3831 - 504545440.6
5s ribosomal rnaNot AvailableNot AvailablePositive5558 - 5670Not Available
inorganic pyrophosphataseRT97_00040Not AvailableNegative5817 - 634419319.4

Displaying genes 1 – 10 of 6079 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

57 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm00021245-dehydro-4-deoxy-D-glucarateC6H6O7Chemical structure of 5-dehydro-4-deoxy-D-glucarateNot available
Average190.1076Da
Monoisotopic190.0113525Da
BASm0002198beta-D-ribofuranoseC5H10O5Chemical structure of beta-D-ribofuranose50-69-1
Average150.1299Da
Monoisotopic150.05282343Da

Displaying 1–10 of 57 metabolites

Health Effects

No health effects information available for this bacterium.